PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn137411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 178aa    MW: 19275 Da    PI: 7.3026
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn137411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601421.9e-4410108199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+k+l+++ +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l+ el+++++
  Achn137411  10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVSKILNEILPHQREDAVSSLAYEAEARIRDPVYGCVGAISFLQRQVERLQRELEAANT 108
                 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2959110IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-4310107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MASTSMYTSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFI NVHKIFGASN VSKILNEILP  60
HQREDAVSSL AYEAEARIRD PVYGCVGAIS FLQRQVERLQ RELEAANTDL IRYACGEIQT  120
ALPAAGGLQV GPPPDSVVDF TRRIGNGGGG FHQTPSLPFP YPLPWNDSPS GGGEGKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318660.11e-94hypothetical protein POPTR_0012s08540g
RefseqXP_011047821.19e-95PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML43e-68LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLB9I3C81e-94B9I3C8_POPTR; Uncharacterized protein
STRINGPOPTR_0012s08540.13e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-69LBD family protein